the Mrgscr utility¶
This file explains the i/o parameters needed for the screening files (SCR) merging code (MRGSCR).
The user is advised to be familiar with the main abinit help file especially the GW part before reading the present file.
The mrgscr is a utility that comes with the ABINIT code. It is used to merge partial screening files. These files contain the screening calculated on some selected q points generated using the input variables ‘nqptdm’ and ‘qptdm’. The mrgscr utility merge these files into a single file that contain the screening on the full list of q points.
Like other utilities within ABINIT (e.g. mrgddb, mrgkk), the input is very simple, and could be given directly at the screen, or more conveniently, piped from a file.
The user should give the number of SCRs that will be merged in the first line, then the name of the output file in the second line, after what he/she shall write the whole set of filenames for the SCRs to be merged, one on each line.
2 Why such utility can be useful?¶
The GW part of ABINIT code in its present version (5.x) is not yet parallelized. The input variables ‘nqptdm’ and ‘qptdm’ are meant to be used as a kind of manual parallelization by splitting the whole screening calculation into several smaller jobs which can be submitted into several machines simultaneously. mrgscr later can be used to merge the several output SCRs into a single file.
3 How does the mrgscr code work ?¶
First the code reads the header of the first partial file, then it calculates the full list of q points that should exist in the full screening file. Then it checks the consistency of the other files and the existing q points in each file. Last it merges the files into a single file, but it worth to say here that merging WILL NOT be successful and no output file will be generated if:
1) the files are not consistent, i.e, different PPs, different DM size etc.; usually the files MUST be generated under same conditions for every single input variable, except of course for ‘nqptdm’ and =20 ‘qptdm’.
2) the various input partial screening files can not form a complete file via merging. This often happen if the user still have one or =20 more q points on which screening still need to be calculated.
4 What if there is a repetition of one or more q points through different input partial screening files?¶
No problem, the code will include only one q point from every two repeated q points, and will report it in the log file.
5 How to check the status of the resulting screening file, or partial files, what is there, what is needed, etc.?¶
mrgscr can do it, the user only need to use a two-line input file. The first line of the input file should be 0, then the second line should contain the name of the file to be checked. The result of the checking is reported through the log file.
merging case 3 <== the number of files to be merged out <== name of out put file 1_SCR <== start:name of the files, to be merged 2_SCR 3_SCR 1 <== to merge q-points (2 = to merge frequencies) checking case 0 <== just write zero 1_SCR <== the name of the file to be checked